From a5f54a2a483d1161edcd5528251eb13577882e41 Mon Sep 17 00:00:00 2001 From: VenkataKrishna Reddy Avula Date: Mon, 27 Jan 2025 21:27:15 +0000 Subject: [PATCH] Merged in feature/daip2-17 (pull request #362) Feature/daip2- 17 - Aarete derived field values and crosswalk mapping * fix pipeline error * fix pipeline error * fix pipeline error * fix pipeline error * fix pipeline error * Update fieldSet unit test * Update test_from_values * Fix circular import * Added NLTK * Add NLTK to path * Update gitignore * included txt files for nltk_data * move nltk_data to src * Fix last upload count * Last upload count bugfix * Fixed B processing * Remove client-specific postprocessing * split consolidate_output * aarete derived AC fields mapping * chnages reverted * AC Croasswalk Mapping * Merge branch 'main' into feature/daip2-17 * Update poetry.lock * Add init for crosswalk * Complete paths Approved-by: Alex Galarce --- fieldExtraction/crosswalk/__init__.py | 0 .../crosswalk/test_crosswalk_utils.py | 2 +- fieldExtraction/poetry.lock | 858 ++++++++++-------- fieldExtraction/pyproject.toml | 3 + .../src/investment/file_processing.py | 1 + fieldExtraction/src/investment/postprocess.py | 17 +- .../src/prompts/investment_prompts.json | 5 +- .../src/prompts/investment_prompts.py | 3 + 8 files changed, 521 insertions(+), 368 deletions(-) create mode 100644 fieldExtraction/crosswalk/__init__.py diff --git a/fieldExtraction/crosswalk/__init__.py b/fieldExtraction/crosswalk/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/fieldExtraction/crosswalk/test_crosswalk_utils.py b/fieldExtraction/crosswalk/test_crosswalk_utils.py index 3d06d7e..d70b895 100644 --- a/fieldExtraction/crosswalk/test_crosswalk_utils.py +++ b/fieldExtraction/crosswalk/test_crosswalk_utils.py @@ -3,7 +3,7 @@ import json import pandas as pd import pytest -from crosswalk_utils import CrosswalkBuilder, apply_crosswalk +from crosswalk.crosswalk_utils import CrosswalkBuilder, apply_crosswalk 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lock-version = "2.0" python-versions = "^3.12" -content-hash = "5532a2e4ebb4f78baa5770b57573cdfc7c3a6397cf8d5f94c4593b14ddb162d3" +content-hash = "373bac7732238914f6278d5d323cb063458644b41accd5782d024e708cbcde74" diff --git a/fieldExtraction/pyproject.toml b/fieldExtraction/pyproject.toml index 24f726f..7e3af24 100644 --- a/fieldExtraction/pyproject.toml +++ b/fieldExtraction/pyproject.toml @@ -16,6 +16,9 @@ psutil = "^6.1.0" rapidfuzz = "^3.10.1" pyxlsb = "^1.0.10" openpyxl = "^3.1.5" +pytest-mock = "^3.14.0" +langchain = "^0.3.14" +langchainhub = "^0.1.21" langchain-chroma = "^0.2.0" langchain-aws = "^0.2.11" langchain-text-splitters = "^0.3.5" diff --git a/fieldExtraction/src/investment/file_processing.py b/fieldExtraction/src/investment/file_processing.py index 2b387a7..1d20216 100644 --- a/fieldExtraction/src/investment/file_processing.py +++ b/fieldExtraction/src/investment/file_processing.py @@ -13,6 +13,7 @@ from src import config from src.regex.regex_utils import irs_hotfix, npi_hotfix import src.utils.string_utils as string_utils import src.utils.io_utils as io_utils +from src.config import FIELD_JSON_PATH def process_file(file_object, run_timestamp): diff --git a/fieldExtraction/src/investment/postprocess.py b/fieldExtraction/src/investment/postprocess.py index 9a6ec52..b98c230 100644 --- a/fieldExtraction/src/investment/postprocess.py +++ b/fieldExtraction/src/investment/postprocess.py @@ -1,12 +1,25 @@ import src.constants.valid as valid from src import postprocessing_funcs - +from crosswalk.crosswalk_utils import CrosswalkBuilder, apply_crosswalk +from pathlib import Path +import pandas as pd +import os +# Determine the base directory for the project +BASE_DIR = os.path.dirname(os.path.dirname(os.path.dirname(os.path.abspath(__file__)))) +# Path to the mappings folder +MAPPINGS_DIR = os.path.join(BASE_DIR, 'crosswalk', 'mappings') def postprocess(df): if df.shape[0] > 0: # Add postprocessing here - + + # applying crosswalk for AARETE_DERIVED_CLAIM_TYPE_CD + claim_type_mapping_path = os.path.join(MAPPINGS_DIR,"crosswalk_claim_type.json") + claim_type_crosswalk = CrosswalkBuilder().from_json(str(claim_type_mapping_path)) + print(claim_type_crosswalk.mapping) + df['AARETE_DERIVED_CLAIM_TYPE_CD'] = df['AARETE_DERIVED_CLAIM_TYPE_CD'].apply(lambda x: apply_crosswalk(str(x), claim_type_crosswalk.mapping) if pd.notna(x) else x) + return df else: diff --git a/fieldExtraction/src/prompts/investment_prompts.json b/fieldExtraction/src/prompts/investment_prompts.json index ade26ad..cc1f331 100644 --- a/fieldExtraction/src/prompts/investment_prompts.json +++ b/fieldExtraction/src/prompts/investment_prompts.json @@ -177,9 +177,10 @@ }, { "field_name": "AARETE_DERIVED_CLAIM_TYPE_CD", + "base_field": "CONTRACT_CLAIM_TYPE_CD", "relationship": "one_to_one", - "field_type": "TBD", - "prompt": "TBD" + "field_type": "derived", + "prompt": "convert the claim type value to appropriate code: Return H for 'facility' or 'hospital' or 'Institutional'. Return M for 'ancillary' or 'professional'. Claim type: {CONTRACT_CLAIM_TYPE_CD}. Return only 'H' or 'M' without any additional text." }, { "field_name": "AARETE_DERIVED_PRODUCT", diff --git a/fieldExtraction/src/prompts/investment_prompts.py b/fieldExtraction/src/prompts/investment_prompts.py index 3c4f13c..b8f2c16 100644 --- a/fieldExtraction/src/prompts/investment_prompts.py +++ b/fieldExtraction/src/prompts/investment_prompts.py @@ -1,4 +1,5 @@ from src.constants.investment_values import VALID_LOBS, VALID_NETWORKS, VALID_PROGRAMS, VALID_CONTRACT_CLAIM_TYPE +import src.constants.valid as valid ##################################################################################### ###################################### PROMPTS ###################################### @@ -13,6 +14,7 @@ class Field: self.field_type = field_dict['field_type'] self.prompt = field_dict['prompt'] self.valid_values = field_dict['valid_values'] if 'valid_values' in field_dict else None + self.base_field = field_dict['base_field'] if 'base_field' in field_dict else None # Smart Chunking Attributes self.keywords = field_dict['keywords'] if 'keywords' in field_dict else None self.methodology = field_dict['methodology'] if 'methodology' in field_dict else None @@ -27,6 +29,7 @@ class Field: def to_dict(self): return { "field_name": self.field_name, + "base_field":self.base_field, "relationship": self.relationship, "field_type": self.field_type, "prompt": self.prompt,